Variant report

Variant	rs73365615
Chromosome Location	chr12:60586487-60586488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60554713..60557488-chr12:60585301..60588073,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11832585	1.00[EUR][1000 genomes]
rs11832722	1.00[EUR][1000 genomes]
rs11834001	1.00[EUR][1000 genomes]
rs1948444	1.00[EUR][1000 genomes]
rs3847659	1.00[EUR][1000 genomes]
rs3847660	1.00[EUR][1000 genomes]
rs4758850	1.00[EUR][1000 genomes]
rs7132956	1.00[EUR][1000 genomes]
rs73351905	1.00[EUR][1000 genomes]
rs73355386	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73355390	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73355396	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357118	1.00[EUR][1000 genomes]
rs73357123	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357124	1.00[EUR][1000 genomes]
rs73357126	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357128	1.00[EUR][1000 genomes]
rs73357132	1.00[AFR][1000 genomes]
rs73357137	1.00[EUR][1000 genomes]
rs73357141	1.00[EUR][1000 genomes]
rs73357774	1.00[EUR][1000 genomes]
rs73364822	1.00[EUR][1000 genomes]
rs73364863	1.00[EUR][1000 genomes]
rs73364867	1.00[EUR][1000 genomes]
rs73364874	1.00[EUR][1000 genomes]
rs73364876	1.00[EUR][1000 genomes]
rs73365604	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365610	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365614	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365622	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365630	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365639	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365644	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365647	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365653	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365654	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73367126	1.00[EUR][1000 genomes]
rs73367133	1.00[EUR][1000 genomes]
rs73367151	1.00[EUR][1000 genomes]
rs73367159	1.00[EUR][1000 genomes]
rs73367163	1.00[EUR][1000 genomes]
rs73368260	1.00[EUR][1000 genomes]
rs73368266	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73368845	1.00[EUR][1000 genomes]
rs73368875	1.00[EUR][1000 genomes]
rs73368992	1.00[EUR][1000 genomes]
rs73368998	1.00[EUR][1000 genomes]
rs73369000	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370709	1.00[EUR][1000 genomes]
rs73370724	1.00[EUR][1000 genomes]
rs73370735	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370758	1.00[EUR][1000 genomes]
rs73370766	1.00[EUR][1000 genomes]
rs73370770	1.00[EUR][1000 genomes]
rs73370779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60583600-60588400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60586000-60603400	Weak transcription	HMEC	breast
3	chr12:60586200-60590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:60586400-60588400	Weak transcription	NHDF-Ad	bronchial

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