Variant report

Variant	rs73357132
Chromosome Location	chr12:60659540-60659541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs73355386	0.86[AFR][1000 genomes]
rs73355390	1.00[AFR][1000 genomes]
rs73355396	0.86[AFR][1000 genomes]
rs73357123	1.00[AFR][1000 genomes]
rs73357126	1.00[AFR][1000 genomes]
rs73365604	0.95[AFR][1000 genomes]
rs73365607	1.00[AFR][1000 genomes]
rs73365610	1.00[AFR][1000 genomes]
rs73365614	1.00[AFR][1000 genomes]
rs73365615	1.00[AFR][1000 genomes]
rs73365622	1.00[AFR][1000 genomes]
rs73365630	0.95[AFR][1000 genomes]
rs73365639	1.00[AFR][1000 genomes]
rs73365644	0.86[AFR][1000 genomes]
rs73365647	0.86[AFR][1000 genomes]
rs73365653	1.00[AFR][1000 genomes]
rs73365654	0.86[AFR][1000 genomes]
rs73368266	0.80[AFR][1000 genomes]
rs73369000	1.00[AFR][1000 genomes]
rs73370735	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60657200-60659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60657200-60659800	Weak transcription	HUVEC	blood vessel
3	chr12:60657200-60660600	Enhancers	Hela-S3	cervix
4	chr12:60658200-60659600	Enhancers	A549	lung
5	chr12:60659400-60660200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:60659400-60660200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:60659400-60660400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:60659400-60661000	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links