Variant report

Variant	rs73355396
Chromosome Location	chr12:60626821-60626822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60618343..60621126-chr12:60626105..60627669,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11832585	1.00[EUR][1000 genomes]
rs11832722	1.00[EUR][1000 genomes]
rs11834001	1.00[EUR][1000 genomes]
rs1948444	1.00[EUR][1000 genomes]
rs3847659	1.00[EUR][1000 genomes]
rs3847660	1.00[EUR][1000 genomes]
rs4758850	1.00[EUR][1000 genomes]
rs57822720	1.00[EUR][1000 genomes]
rs7132956	1.00[EUR][1000 genomes]
rs73351905	1.00[EUR][1000 genomes]
rs73355386	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73355390	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357118	1.00[EUR][1000 genomes]
rs73357123	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357124	1.00[EUR][1000 genomes]
rs73357126	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357128	1.00[EUR][1000 genomes]
rs73357132	0.86[AFR][1000 genomes]
rs73357137	1.00[EUR][1000 genomes]
rs73357141	1.00[EUR][1000 genomes]
rs73357774	1.00[EUR][1000 genomes]
rs73364822	1.00[EUR][1000 genomes]
rs73364863	1.00[EUR][1000 genomes]
rs73364867	1.00[EUR][1000 genomes]
rs73364874	1.00[EUR][1000 genomes]
rs73364876	1.00[EUR][1000 genomes]
rs73365604	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365607	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365610	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365614	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365615	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365622	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365630	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365639	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365644	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365647	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365653	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73365654	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73366675	1.00[EUR][1000 genomes]
rs73366682	1.00[EUR][1000 genomes]
rs73368260	1.00[EUR][1000 genomes]
rs73368266	1.00[EUR][1000 genomes]
rs73368845	1.00[EUR][1000 genomes]
rs73368875	1.00[EUR][1000 genomes]
rs73368992	1.00[EUR][1000 genomes]
rs73368998	1.00[EUR][1000 genomes]
rs73369000	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370709	1.00[EUR][1000 genomes]
rs73370724	1.00[EUR][1000 genomes]
rs73370735	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370758	1.00[EUR][1000 genomes]
rs73370766	1.00[EUR][1000 genomes]
rs73370770	1.00[EUR][1000 genomes]
rs73370779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754064	chr12:60608389-60645117	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60599600-60645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60625000-60627200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:60625200-60632600	Weak transcription	K562	blood
4	chr12:60626800-60628200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links