Variant report
| Variant | rs73357774 |
|---|---|
| Chromosome Location | chr12:60781747-60781748 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs57822720 | 1.00[EUR][1000 genomes] |
| rs60891596 | 1.00[EUR][1000 genomes] |
| rs73355386 | 1.00[EUR][1000 genomes] |
| rs73355390 | 1.00[EUR][1000 genomes] |
| rs73355396 | 1.00[EUR][1000 genomes] |
| rs73357118 | 1.00[EUR][1000 genomes] |
| rs73357123 | 1.00[EUR][1000 genomes] |
| rs73357124 | 1.00[EUR][1000 genomes] |
| rs73357126 | 1.00[EUR][1000 genomes] |
| rs73357128 | 1.00[EUR][1000 genomes] |
| rs73357137 | 1.00[EUR][1000 genomes] |
| rs73357141 | 1.00[EUR][1000 genomes] |
| rs73365607 | 1.00[EUR][1000 genomes] |
| rs73365610 | 1.00[EUR][1000 genomes] |
| rs73365614 | 1.00[EUR][1000 genomes] |
| rs73365615 | 1.00[EUR][1000 genomes] |
| rs73365622 | 1.00[EUR][1000 genomes] |
| rs73365630 | 1.00[EUR][1000 genomes] |
| rs73365639 | 1.00[EUR][1000 genomes] |
| rs73365644 | 1.00[EUR][1000 genomes] |
| rs73365647 | 1.00[EUR][1000 genomes] |
| rs73365653 | 1.00[EUR][1000 genomes] |
| rs73365654 | 1.00[EUR][1000 genomes] |
| rs73366675 | 1.00[EUR][1000 genomes] |
| rs73366682 | 1.00[EUR][1000 genomes] |
| rs73368260 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73368266 | 1.00[EUR][1000 genomes] |
| rs73368992 | 1.00[EUR][1000 genomes] |
| rs73368998 | 1.00[EUR][1000 genomes] |
| rs73369000 | 1.00[EUR][1000 genomes] |
| rs73370709 | 1.00[EUR][1000 genomes] |
| rs73370724 | 1.00[EUR][1000 genomes] |
| rs73370735 | 1.00[EUR][1000 genomes] |
| rs73370758 | 1.00[EUR][1000 genomes] |
| rs73370766 | 1.00[EUR][1000 genomes] |
| rs73370770 | 1.00[EUR][1000 genomes] |
| rs73370779 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899137 | chr12:60568891-60797083 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60772400-60788000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr12:60781600-60781800 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
