Variant report

Variant	rs73370766
Chromosome Location	chr12:60698546-60698547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11832585	1.00[EUR][1000 genomes]
rs11834001	1.00[EUR][1000 genomes]
rs1948444	1.00[EUR][1000 genomes]
rs3847659	1.00[EUR][1000 genomes]
rs3847660	1.00[EUR][1000 genomes]
rs4758850	1.00[EUR][1000 genomes]
rs57822720	1.00[EUR][1000 genomes]
rs60891596	1.00[EUR][1000 genomes]
rs7132956	1.00[EUR][1000 genomes]
rs73351905	1.00[EUR][1000 genomes]
rs73355386	1.00[EUR][1000 genomes]
rs73355390	1.00[EUR][1000 genomes]
rs73355396	1.00[EUR][1000 genomes]
rs73357118	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357123	1.00[EUR][1000 genomes]
rs73357124	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357126	1.00[EUR][1000 genomes]
rs73357128	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357137	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357141	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73357774	1.00[EUR][1000 genomes]
rs73364876	1.00[EUR][1000 genomes]
rs73365604	1.00[EUR][1000 genomes]
rs73365607	1.00[EUR][1000 genomes]
rs73365610	1.00[EUR][1000 genomes]
rs73365614	1.00[EUR][1000 genomes]
rs73365615	1.00[EUR][1000 genomes]
rs73365622	1.00[EUR][1000 genomes]
rs73365630	1.00[EUR][1000 genomes]
rs73365639	1.00[EUR][1000 genomes]
rs73365644	1.00[EUR][1000 genomes]
rs73365647	1.00[EUR][1000 genomes]
rs73365653	1.00[EUR][1000 genomes]
rs73365654	1.00[EUR][1000 genomes]
rs73366377	0.96[AFR][1000 genomes]
rs73366675	1.00[EUR][1000 genomes]
rs73366682	1.00[EUR][1000 genomes]
rs73368260	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73368266	1.00[EUR][1000 genomes]
rs73368845	1.00[EUR][1000 genomes]
rs73368875	1.00[EUR][1000 genomes]
rs73368992	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73368998	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73369000	1.00[EUR][1000 genomes]
rs73370709	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370724	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370735	1.00[EUR][1000 genomes]
rs73370758	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370770	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73370779	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3413651	chr12:60695185-60698983	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60695000-60701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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