Variant report
| Variant | rs57822720 |
|---|---|
| Chromosome Location | chr12:60812911-60812912 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLC16A7-6 | chr12:60812764-60813074 | NONHSAT029065 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs17123936 | 1.00[EUR][1000 genomes] |
| rs60891596 | 1.00[EUR][1000 genomes] |
| rs73355386 | 1.00[EUR][1000 genomes] |
| rs73355390 | 1.00[EUR][1000 genomes] |
| rs73355396 | 1.00[EUR][1000 genomes] |
| rs73357118 | 1.00[EUR][1000 genomes] |
| rs73357123 | 1.00[EUR][1000 genomes] |
| rs73357124 | 1.00[EUR][1000 genomes] |
| rs73357126 | 1.00[EUR][1000 genomes] |
| rs73357128 | 1.00[EUR][1000 genomes] |
| rs73357137 | 1.00[EUR][1000 genomes] |
| rs73357141 | 1.00[EUR][1000 genomes] |
| rs73357774 | 1.00[EUR][1000 genomes] |
| rs73365653 | 1.00[EUR][1000 genomes] |
| rs73365654 | 1.00[EUR][1000 genomes] |
| rs73366675 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73366682 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73368260 | 1.00[EUR][1000 genomes] |
| rs73368266 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73368992 | 1.00[EUR][1000 genomes] |
| rs73368998 | 1.00[EUR][1000 genomes] |
| rs73369000 | 1.00[EUR][1000 genomes] |
| rs73370709 | 1.00[EUR][1000 genomes] |
| rs73370724 | 1.00[EUR][1000 genomes] |
| rs73370735 | 1.00[EUR][1000 genomes] |
| rs73370758 | 1.00[EUR][1000 genomes] |
| rs73370766 | 1.00[EUR][1000 genomes] |
| rs73370770 | 1.00[EUR][1000 genomes] |
| rs73370779 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv832432 | chr12:60801619-60968907 | Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60810400-60819400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
