Variant report

Variant	rs73367159
Chromosome Location	chr12:60406862-60406863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11832585	1.00[EUR][1000 genomes]
rs11832722	1.00[EUR][1000 genomes]
rs11834001	1.00[EUR][1000 genomes]
rs1948444	1.00[EUR][1000 genomes]
rs3847659	1.00[EUR][1000 genomes]
rs3847660	1.00[EUR][1000 genomes]
rs4758850	1.00[EUR][1000 genomes]
rs56017517	1.00[EUR][1000 genomes]
rs7132956	1.00[EUR][1000 genomes]
rs73351905	1.00[EUR][1000 genomes]
rs73354417	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73354432	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73355386	1.00[EUR][1000 genomes]
rs73358620	1.00[EUR][1000 genomes]
rs73358624	1.00[EUR][1000 genomes]
rs73364822	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73364852	0.84[AFR][1000 genomes]
rs73364863	1.00[EUR][1000 genomes]
rs73364867	1.00[EUR][1000 genomes]
rs73364874	1.00[EUR][1000 genomes]
rs73364876	1.00[EUR][1000 genomes]
rs73365604	1.00[EUR][1000 genomes]
rs73365607	1.00[EUR][1000 genomes]
rs73365610	1.00[EUR][1000 genomes]
rs73365614	1.00[EUR][1000 genomes]
rs73365615	1.00[EUR][1000 genomes]
rs73365622	1.00[EUR][1000 genomes]
rs73365630	1.00[EUR][1000 genomes]
rs73365639	1.00[EUR][1000 genomes]
rs73365644	1.00[EUR][1000 genomes]
rs73365647	1.00[EUR][1000 genomes]
rs73365653	1.00[EUR][1000 genomes]
rs73365654	1.00[EUR][1000 genomes]
rs73367126	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73367132	0.96[AFR][1000 genomes]
rs73367133	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73367151	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73367163	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73368845	1.00[EUR][1000 genomes]
rs73368875	1.00[EUR][1000 genomes]
rs7966802	1.00[EUR][1000 genomes]
rs7977969	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60404800-60408000	Weak transcription	Stomach Mucosa	stomach
2	chr12:60405000-60407400	Weak transcription	Fetal Intestine Small	intestine
3	chr12:60405200-60408200	Weak transcription	Fetal Intestine Large	intestine

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