Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10783812	0.83[ASN][1000 genomes]
rs10876944	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172030	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11172037	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11172043	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11172047	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11172056	0.83[ASN][1000 genomes]
rs11172057	0.83[ASN][1000 genomes]
rs12300079	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12321987	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12426816	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28876529	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4326839	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4417325	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471472	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4495925	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4514464	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4633499	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7302420	0.83[ASN][1000 genomes]
rs9919772	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57267400-57274200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:57268400-57274200	Weak transcription	Fetal Kidney	kidney
3	chr12:57271600-57273600	Enhancers	Placenta	Placenta
4	chr12:57272000-57274000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:57272000-57274000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:57272000-57274000	Weak transcription	HSMMtube	muscle
7	chr12:57272200-57274000	Weak transcription	Liver	Liver
8	chr12:57272200-57274000	Weak transcription	HSMM	muscle
9	chr12:57272400-57273400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
10	chr12:57272400-57274000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:57272400-57274000	Weak transcription	A549	lung
12	chr12:57272600-57273600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:57272600-57274000	Weak transcription	K562	blood

Quick Search: