Variant report

Variant	rs4471472
Chromosome Location	chr12:57268985-57268986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10876944	0.84[EUR][1000 genomes]
rs11172030	0.84[EUR][1000 genomes]
rs12300079	0.80[EUR][1000 genomes]
rs12300191	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4326839	0.84[EUR][1000 genomes]
rs4417325	0.84[EUR][1000 genomes]
rs4495925	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4514464	0.83[EUR][1000 genomes]
rs4633499	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919772	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57265400-57270000	Weak transcription	Liver	Liver
2	chr12:57267400-57274200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:57268000-57269400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:57268200-57269200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:57268200-57269400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:57268400-57269200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:57268400-57269400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:57268400-57269400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:57268400-57274200	Weak transcription	Fetal Kidney	kidney
10	chr12:57268600-57269200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:57268800-57269200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:57268800-57269400	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links