Variant report

Variant	rs12302664
Chromosome Location	chr12:119250937-119250938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11069093	0.89[ASN][1000 genomes]
rs12316636	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34289882	0.83[EUR][1000 genomes]
rs35814276	0.83[EUR][1000 genomes]
rs35849127	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57095089	0.83[EUR][1000 genomes]
rs71452671	0.83[EUR][1000 genomes]
rs71452672	0.83[EUR][1000 genomes]
rs7298004	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7309737	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7311401	0.89[ASN][1000 genomes]
rs7974231	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2757516	chr12:119229694-119294323	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759916	chr12:119229694-119294323	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv826525	chr12:119247463-119290732	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119250800-119251200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:119250800-119252200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:119250800-119252800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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