Variant report

Variant	rs12303592
Chromosome Location	chr12:117297089-117297090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117290976..117294327-chr12:117296336..117299387,3	MCF-7	breast:
2	chr12:117262300..117265228-chr12:117296099..117298850,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12308184	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310988	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12312336	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12317933	1.00[AMR][1000 genomes]
rs16947036	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16947049	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs4767460	0.81[LWK][hapmap]
rs56748568	1.00[EUR][1000 genomes]
rs57370760	1.00[EUR][1000 genomes]
rs58984530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61306390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7303535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73395528	1.00[EUR][1000 genomes]
rs73405130	1.00[EUR][1000 genomes]
rs7967445	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:117292400-117297800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:117294000-117297400	Weak transcription	HSMMtube	muscle
4	chr12:117294000-117300000	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:117294600-117297800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:117294600-117298600	Weak transcription	Thymus	Thymus
7	chr12:117294600-117302000	Weak transcription	Hela-S3	cervix
8	chr12:117294800-117302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:117295000-117297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:117295400-117299200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:117296000-117297200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:117296000-117297200	Enhancers	Brain Angular Gyrus	brain
13	chr12:117296000-117297200	Enhancers	Brain Cingulate Gyrus	brain
14	chr12:117296000-117298000	Enhancers	Brain Germinal Matrix	brain
15	chr12:117296000-117299800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:117296000-117300000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:117296200-117297200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:117296200-117297400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:117296200-117297400	Enhancers	Brain Substantia Nigra	brain
20	chr12:117296200-117297400	Enhancers	Fetal Brain Female	brain
21	chr12:117296200-117297600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:117296200-117297600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:117296200-117298200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr12:117296400-117297200	Weak transcription	GM12878-XiMat	blood
25	chr12:117296400-117297400	Weak transcription	HSMM	muscle
26	chr12:117296600-117297800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr12:117296600-117298400	Weak transcription	Primary B cells from cord blood	blood
28	chr12:117296800-117297200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr12:117296800-117298200	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr12:117296800-117299000	Genic enhancers	Fetal Thymus	thymus
31	chr12:117297000-117297200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr12:117297000-117297400	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr12:117297000-117297800	Active TSS	Brain Anterior Caudate	brain
34	chr12:117297000-117298600	Enhancers	Spleen	Spleen

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