Variant report

Variant	rs56748568
Chromosome Location	chr12:117329871-117329872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12303592	1.00[EUR][1000 genomes]
rs12308184	1.00[EUR][1000 genomes]
rs12310988	1.00[EUR][1000 genomes]
rs12312336	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16947036	1.00[EUR][1000 genomes]
rs16947049	1.00[EUR][1000 genomes]
rs57370760	1.00[EUR][1000 genomes]
rs58984530	1.00[EUR][1000 genomes]
rs61306390	1.00[EUR][1000 genomes]
rs7303535	1.00[EUR][1000 genomes]
rs73395528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117328600-117332800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:117329600-117330600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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