Variant report

Variant	rs12303661
Chromosome Location	chr12:8985172-8985173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr12:8985161-8985508	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr12:8985165-8985425	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8973639..8975831-chr12:8984866..8987670,2	K562	blood:
2	chr12:8980074..8981757-chr12:8983950..8986667,2	MCF-7	breast:

Variant related genes	Relation type
A2ML1-AS1	TF binding region
ENSG00000166535	Chromatin interaction

rs_ID	r²[population]
rs10743503	1.00[EUR][1000 genomes]
rs12303291	1.00[EUR][1000 genomes]
rs1344452	1.00[EUR][1000 genomes]
rs2098244	1.00[EUR][1000 genomes]
rs2377599	1.00[EUR][1000 genomes]
rs28371455	1.00[EUR][1000 genomes]
rs4497462	0.83[AMR][1000 genomes]
rs4883188	1.00[EUR][1000 genomes]
rs56046421	0.83[EUR][1000 genomes]
rs73036961	1.00[EUR][1000 genomes]
rs73036962	1.00[EUR][1000 genomes]
rs73036963	1.00[EUR][1000 genomes]
rs73036965	1.00[EUR][1000 genomes]
rs73036969	1.00[EUR][1000 genomes]
rs73036972	1.00[EUR][1000 genomes]
rs73036979	1.00[EUR][1000 genomes]
rs73036986	1.00[EUR][1000 genomes]
rs73036989	1.00[EUR][1000 genomes]
rs73036991	1.00[EUR][1000 genomes]
rs73036994	1.00[EUR][1000 genomes]
rs73036998	1.00[EUR][1000 genomes]
rs73036999	1.00[EUR][1000 genomes]
rs73037000	0.86[EUR][1000 genomes]
rs73037001	1.00[EUR][1000 genomes]
rs73037002	1.00[EUR][1000 genomes]
rs7313569	1.00[CEU][hapmap]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:8979200-8985400	Enhancers	Placenta	Placenta
3	chr12:8980600-8985800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:8981600-8987200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:8981800-8986800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:8981800-8987400	Weak transcription	Esophagus	oesophagus
7	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:8982600-8988000	Weak transcription	K562	blood
9	chr12:8983200-8985800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:8983200-8986400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:8983800-8985600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr12:8983800-8999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:8984000-8986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:8984000-8987000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:8984200-8985200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:8984200-8985200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr12:8984400-8986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:8984600-8985200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:8984600-8985400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:8984600-8985400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr12:8985000-8985400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr12:8985000-8985800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:8985000-8985800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr12:8985000-8985800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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