Variant report

Variant	rs12305407
Chromosome Location	chr12:63169212-63169213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63164373..63167364-chr12:63168483..63171041,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11832267	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11832892	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11835042	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12303266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683940	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57458527	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67454431	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68180179	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7297013	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7297041	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7297161	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7298908	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311502	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73314563	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73314565	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73314585	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63145800-63169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:63150000-63179800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:63153600-63171000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:63161400-63180000	Weak transcription	Aorta	Aorta
5	chr12:63161800-63179400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:63162000-63170400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr12:63162200-63174800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:63163600-63178400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:63163800-63175000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:63164600-63175200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:63164800-63170400	Weak transcription	Gastric	stomach
12	chr12:63164800-63177200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:63164800-63177600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:63164800-63177800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:63165600-63182000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:63166000-63177200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:63166400-63170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:63166400-63171000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:63166600-63175400	Weak transcription	A549	lung
20	chr12:63166600-63177800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:63166600-63179600	Weak transcription	NHLF	lung
22	chr12:63167000-63177800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:63167600-63171000	Weak transcription	Pancreas	Pancrea
24	chr12:63167800-63174800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:63167800-63177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:63168000-63170200	Weak transcription	Fetal Intestine Large	intestine
27	chr12:63168200-63170400	Weak transcription	Fetal Intestine Small	intestine
28	chr12:63168200-63180000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:63168400-63177800	Weak transcription	Left Ventricle	heart
30	chr12:63168800-63169400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr12:63169000-63170400	Weak transcription	HepG2	liver
32	chr12:63169200-63171000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr12:63169200-63177800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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