Variant report

Variant	rs12306440
Chromosome Location	chr12:73844397-73844398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10083125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10160854	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11179658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11179660	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12316646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1520551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112387	1.00[AMR][1000 genomes]
rs17112391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6582170	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv899277	chr12:73773886-73875790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832457	chr12:73784588-74011986	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1043656	chr12:73795943-74341905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv541536	chr12:73795943-74341905	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv899278	chr12:73841211-73977563	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73843600-73846800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:73844000-73846600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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