Variant report

Variant	rs12316646
Chromosome Location	chr12:73882829-73882830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10083125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10160854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11179658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11179660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307050	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1520551	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6582170	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298578	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832457	chr12:73784588-74011986	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043656	chr12:73795943-74341905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv541536	chr12:73795943-74341905	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv899278	chr12:73841211-73977563	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73880600-73883000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:73880800-73883200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:73882800-73883000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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