The 2.0 version of rSNPBase

Variant report

Variant rs1230715
Chromosome Location chr1:114428086-114428087
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114415000-114447000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:114415400-114428800 Weak transcription Colonic Mucosa Colon
3 chr1:114415400-114437000 Weak transcription Thymus Thymus
4 chr1:114417200-114437000 Weak transcription Primary B cells from cord blood blood
5 chr1:114417600-114428800 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr1:114420200-114437800 Weak transcription Brain Hippocampus Middle brain
7 chr1:114420200-114446400 Weak transcription Aorta Aorta
8 chr1:114421800-114429600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:114422400-114429000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:114422800-114429000 Weak transcription Fetal Stomach stomach
11 chr1:114423400-114429600 Weak transcription Primary T cells fromperipheralblood blood
12 chr1:114423600-114436000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:114424000-114429000 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:114424000-114429800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr1:114424200-114429000 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr1:114424200-114429200 Weak transcription Primary T cells from cord blood blood
17 chr1:114424200-114429800 Weak transcription Primary monocytes fromperipheralblood blood
18 chr1:114424200-114437800 Weak transcription Brain Germinal Matrix brain
19 chr1:114424400-114429000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:114424400-114436200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:114424600-114428800 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:114424600-114428800 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:114424600-114429000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr1:114424600-114429200 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr1:114424600-114430000 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr1:114424600-114431200 Weak transcription Small Intestine intestine
27 chr1:114424600-114433200 Weak transcription GM12878-XiMat blood
28 chr1:114424600-114436400 Weak transcription Primary hematopoietic stem cells blood
29 chr1:114424600-114436600 Weak transcription Fetal Thymus thymus
30 chr1:114424600-114437800 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:114424600-114438800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:114424600-114442400 Weak transcription Psoas Muscle Psoas
33 chr1:114424800-114429000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr1:114424800-114429800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:114424800-114430200 Weak transcription Dnd41 blood
36 chr1:114425000-114436800 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:114425200-114436200 Weak transcription Stomach Smooth Muscle stomach
38 chr1:114425400-114428600 Weak transcription Fetal Intestine Small intestine
39 chr1:114425400-114436400 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr1:114425400-114437400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:114425600-114436400 Weak transcription Brain Substantia Nigra brain
42 chr1:114426400-114431800 Enhancers Primary neutrophils fromperipheralblood blood
43 chr1:114426800-114429800 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr1:114427200-114436800 Weak transcription Fetal Brain Female brain
45 chr1:114427400-114430400 Active TSS Rectal Mucosa Donor 29 rectum
46 chr1:114427400-114437000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:114427600-114437800 Weak transcription Brain Angular Gyrus brain
48 chr1:114427800-114428200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:114427800-114428200 Enhancers Stomach Mucosa stomach
50 chr1:114427800-114428400 Enhancers Pancreas Pancrea

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Last update: Aug 31, 2015