The 2.0 version of rSNPBase

Variant report

Variant rs2488456
Chromosome Location chr1:114431465-114431466
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114415000-114447000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:114415400-114437000 Weak transcription Thymus Thymus
3 chr1:114417200-114437000 Weak transcription Primary B cells from cord blood blood
4 chr1:114420200-114437800 Weak transcription Brain Hippocampus Middle brain
5 chr1:114420200-114446400 Weak transcription Aorta Aorta
6 chr1:114423600-114436000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:114424200-114437800 Weak transcription Brain Germinal Matrix brain
8 chr1:114424400-114436200 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr1:114424600-114433200 Weak transcription GM12878-XiMat blood
10 chr1:114424600-114436400 Weak transcription Primary hematopoietic stem cells blood
11 chr1:114424600-114436600 Weak transcription Fetal Thymus thymus
12 chr1:114424600-114437800 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:114424600-114438800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:114424600-114442400 Weak transcription Psoas Muscle Psoas
15 chr1:114425000-114436800 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:114425200-114436200 Weak transcription Stomach Smooth Muscle stomach
17 chr1:114425400-114436400 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr1:114425400-114437400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:114425600-114436400 Weak transcription Brain Substantia Nigra brain
20 chr1:114426400-114431800 Enhancers Primary neutrophils fromperipheralblood blood
21 chr1:114427200-114436800 Weak transcription Fetal Brain Female brain
22 chr1:114427400-114437000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:114427600-114437800 Weak transcription Brain Angular Gyrus brain
24 chr1:114427800-114432000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:114428200-114437000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:114428200-114437800 Weak transcription Lung lung
27 chr1:114428600-114437800 Weak transcription Esophagus oesophagus
28 chr1:114429200-114437600 Weak transcription HSMMtube muscle
29 chr1:114430000-114434600 Weak transcription Gastric stomach
30 chr1:114430000-114436400 Weak transcription Primary T cells fromperipheralblood blood
31 chr1:114430000-114437400 Weak transcription Placenta Placenta
32 chr1:114430000-114437800 Weak transcription Colonic Mucosa Colon
33 chr1:114430000-114437800 Weak transcription Left Ventricle heart
34 chr1:114430000-114437800 Weak transcription Rectal Smooth Muscle rectum
35 chr1:114430000-114440000 Weak transcription Pancreas Pancrea
36 chr1:114430000-114442400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:114430200-114438400 Weak transcription Fetal Stomach stomach
38 chr1:114430400-114432200 Enhancers Fetal Intestine Small intestine
39 chr1:114430400-114432400 Enhancers Duodenum Mucosa Duodenum
40 chr1:114430400-114436200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:114430400-114436400 Weak transcription Primary T cells from cord blood blood
42 chr1:114430400-114436400 Weak transcription Primary T regulatory cells fromperipheralblood blood
43 chr1:114430400-114436600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr1:114430400-114437400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:114430400-114440000 Weak transcription Colon Smooth Muscle Colon
46 chr1:114430600-114432200 Enhancers Rectal Mucosa Donor 31 rectum
47 chr1:114430600-114436800 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr1:114430600-114436800 Weak transcription Dnd41 blood
49 chr1:114430600-114437200 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr1:114430600-114437200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015