Variant report

Variant	rs12309455
Chromosome Location	chr12:47844481-47844482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10492008	0.94[ASN][1000 genomes]
rs1073864	0.94[ASN][1000 genomes]
rs10785684	0.86[JPT][hapmap]
rs10881113	0.93[ASN][1000 genomes]
rs10881114	0.93[ASN][1000 genomes]
rs10881115	0.94[ASN][1000 genomes]
rs10881116	0.85[JPT][hapmap]
rs11168109	0.89[ASN][1000 genomes]
rs11183959	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183962	0.94[ASN][1000 genomes]
rs11183963	0.94[ASN][1000 genomes]
rs11183971	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12298439	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305366	0.94[ASN][1000 genomes]
rs12306846	0.94[ASN][1000 genomes]
rs12309391	0.94[ASN][1000 genomes]
rs12310759	0.94[ASN][1000 genomes]
rs12314864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12423892	0.94[ASN][1000 genomes]
rs12581930	0.87[JPT][hapmap]
rs12812009	0.92[ASN][1000 genomes]
rs12818961	0.94[ASN][1000 genomes]
rs1919730	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2188943	0.86[JPT][hapmap]
rs2285670	0.94[ASN][1000 genomes]
rs2408794	0.94[ASN][1000 genomes]
rs2408795	0.94[ASN][1000 genomes]
rs2408796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063041	0.88[AMR][1000 genomes]
rs34777576	0.86[AMR][1000 genomes]
rs4277196	0.94[ASN][1000 genomes]
rs4315206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372536	0.94[ASN][1000 genomes]
rs4436625	0.94[ASN][1000 genomes]
rs4466922	0.83[ASN][1000 genomes]
rs4567552	0.94[ASN][1000 genomes]
rs56063940	0.90[AMR][1000 genomes]
rs56140320	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6582711	0.83[ASN][1000 genomes]
rs6582713	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71459084	0.94[ASN][1000 genomes]
rs721371	0.80[ASN][1000 genomes]
rs721372	0.94[ASN][1000 genomes]
rs7295199	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7303012	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7312007	0.91[ASN][1000 genomes]
rs7312534	0.87[JPT][hapmap]
rs7957588	0.89[ASN][1000 genomes]
rs7957847	0.94[ASN][1000 genomes]
rs7958484	0.90[ASN][1000 genomes]
rs7959078	0.94[ASN][1000 genomes]
rs7969870	0.94[ASN][1000 genomes]
rs7972760	0.91[ASN][1000 genomes]
rs7973070	0.91[ASN][1000 genomes]
rs7975878	0.94[ASN][1000 genomes]
rs7975982	0.94[ASN][1000 genomes]
rs7979332	0.80[ASN][1000 genomes]
rs7979578	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv832400	chr12:47840248-48024605	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47842800-47851800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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