Variant report

Variant	rs6582713
Chromosome Location	chr12:47819661-47819662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10492008	0.84[ASN][1000 genomes]
rs1073864	0.84[ASN][1000 genomes]
rs10785684	0.82[JPT][hapmap]
rs10881113	0.83[ASN][1000 genomes]
rs10881114	0.83[ASN][1000 genomes]
rs10881115	0.84[ASN][1000 genomes]
rs11183959	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183962	0.84[ASN][1000 genomes]
rs11183963	0.84[ASN][1000 genomes]
rs11183971	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12298439	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12303963	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12305366	0.84[ASN][1000 genomes]
rs12306846	0.84[ASN][1000 genomes]
rs12309391	0.84[ASN][1000 genomes]
rs12309455	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12310759	0.84[ASN][1000 genomes]
rs12314864	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12423892	0.84[ASN][1000 genomes]
rs12581930	0.83[JPT][hapmap]
rs12812009	0.82[ASN][1000 genomes]
rs12818961	0.84[ASN][1000 genomes]
rs1919730	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2097726	0.80[ASN][1000 genomes]
rs2188943	0.81[JPT][hapmap]
rs2285670	0.84[ASN][1000 genomes]
rs2408794	0.84[ASN][1000 genomes]
rs2408795	0.84[ASN][1000 genomes]
rs2408796	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34063041	0.84[AMR][1000 genomes]
rs34777576	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4277196	0.84[ASN][1000 genomes]
rs4315206	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4372536	0.84[ASN][1000 genomes]
rs4436625	0.84[ASN][1000 genomes]
rs4567552	0.84[ASN][1000 genomes]
rs56063940	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56140320	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6582709	0.80[ASN][1000 genomes]
rs6582710	0.80[ASN][1000 genomes]
rs6582711	0.91[ASN][1000 genomes]
rs71459084	0.84[ASN][1000 genomes]
rs721372	0.84[ASN][1000 genomes]
rs7295199	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7303012	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7312007	0.81[ASN][1000 genomes]
rs7312534	0.83[JPT][hapmap]
rs7957847	0.84[ASN][1000 genomes]
rs7958484	0.84[ASN][1000 genomes]
rs7959078	0.84[ASN][1000 genomes]
rs7969870	0.84[ASN][1000 genomes]
rs7972760	0.81[ASN][1000 genomes]
rs7973070	0.81[ASN][1000 genomes]
rs7975878	0.84[ASN][1000 genomes]
rs7975982	0.84[ASN][1000 genomes]
rs7979578	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47802200-47820000	Weak transcription	Aorta	Aorta
2	chr12:47816200-47820000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:47818200-47820600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:47818600-47820000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:47818600-47820600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:47818800-47820000	Enhancers	Hela-S3	cervix
7	chr12:47819000-47820000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:47819600-47820000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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