| No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
| 1 |
nsv531527 |
chr12:39680812-40182822 |
Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
24 gene(s)
|
inside rSNPs
|
diseases
|
| 2 |
nsv1037457 |
chr12:39898349-40245401 |
Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
9 gene(s)
|
inside rSNPs
|
diseases
|
| 3 |
nsv541480 |
chr12:39898349-40245401 |
Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
9 gene(s)
|
inside rSNPs
|
diseases
|
| 4 |
nsv899015 |
chr12:39946354-40118249 |
Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
2 gene(s)
|
inside rSNPs
|
diseases
|
| 5 |
nsv899018 |
chr12:39949147-40111761 |
Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
2 gene(s)
|
inside rSNPs
|
diseases
|
| 6 |
nsv899022 |
chr12:40014427-40111761 |
Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
2 gene(s)
|
inside rSNPs
|
diseases
|
| 7 |
nsv899023 |
chr12:40046408-40111761 |
Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats
|
Chromatin interactive regionmiRNA target site
|
n/a
|
inside rSNPs
|
diseases
|
| 8 |
nsv899024 |
chr12:40046408-40188870 |
Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription
|
Chromatin interactive regionlncRNAmiRNA target site
|
3 gene(s)
|
inside rSNPs
|
diseases
|
| 9 |
nsv1053603 |
chr12:40082673-40197609 |
Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS
|
Chromatin interactive regionlncRNA
|
3 gene(s)
|
inside rSNPs
|
diseases
|
| 10 |
esv3354584 |
chr12:40103385-40107683 |
ZNF genes & repeats Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 11 |
esv2452886 |
chr12:40103627-40107201 |
ZNF genes & repeats Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 12 |
esv3396865 |
chr12:40104335-40106383 |
Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 13 |
esv3393533 |
chr12:40104585-40109983 |
ZNF genes & repeats Weak transcription Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 14 |
esv3325302 |
chr12:40104735-40109283 |
ZNF genes & repeats Enhancers Weak transcription
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 15 |
esv3420604 |
chr12:40104885-40108783 |
Enhancers ZNF genes & repeats Weak transcription
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 16 |
esv3399539 |
chr12:40105300-40105802 |
Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 17 |
esv3448999 |
chr12:40105334-40105735 |
Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
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