Variant report

Variant	rs1231235
Chromosome Location	chr18:25720456-25720457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1220024	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1220025	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1228421	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1231268	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1443459	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1662735	0.87[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs17536132	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs1785835	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs766266	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
2	chr18:25703800-25727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
4	chr18:25705000-25727800	Weak transcription	Ovary	ovary
5	chr18:25705200-25727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr18:25708800-25721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:25709000-25724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:25709400-25727600	Weak transcription	A549	lung
9	chr18:25710200-25727600	Weak transcription	HepG2	liver
10	chr18:25710400-25726400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:25710400-25726400	Weak transcription	Fetal Brain Female	brain
12	chr18:25710400-25727600	Weak transcription	Brain Anterior Caudate	brain
13	chr18:25710400-25727600	Weak transcription	Brain Substantia Nigra	brain
14	chr18:25710600-25725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr18:25710600-25727400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr18:25712600-25728400	Weak transcription	Right Ventricle	heart
18	chr18:25712600-25730000	Weak transcription	Left Ventricle	heart
19	chr18:25712800-25728400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:25713000-25722000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr18:25713000-25725000	Weak transcription	Liver	Liver
22	chr18:25713000-25727400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:25713800-25724600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr18:25714800-25727600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr18:25716400-25721000	Weak transcription	Fetal Heart	heart
26	chr18:25716400-25722200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr18:25716400-25723000	Weak transcription	HSMM	muscle
28	chr18:25716400-25727400	Weak transcription	HUVEC	blood vessel
29	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr18:25717600-25727600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr18:25717600-25753400	Weak transcription	Dnd41	blood
32	chr18:25718600-25720600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:25719200-25721400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr18:25719800-25722200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:25720000-25723600	Weak transcription	Brain Germinal Matrix	brain
36	chr18:25720000-25724200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr18:25720000-25725000	Weak transcription	Osteobl	bone
38	chr18:25720200-25720600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr18:25720400-25722400	Strong transcription	NH-A	brain

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