Variant report

Variant	rs766266
Chromosome Location	chr18:25689229-25689230
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25185252..25185852-chr18:25688706..25689451,2	MCF-7	breast:
2	chr18:25265639..25266284-chr18:25688923..25689473,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1220024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1220025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1228421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1231235	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1231268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1443459	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1662735	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17536132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1785835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25670600-25690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:25687200-25699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr18:25687400-25689400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:25687400-25690400	Enhancers	Fetal Heart	heart
6	chr18:25687400-25693000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:25687400-25696800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:25687600-25690200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr18:25687600-25693000	Enhancers	Liver	Liver
10	chr18:25687600-25694200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:25687800-25692400	Enhancers	Fetal Brain Female	brain
12	chr18:25687800-25693000	Enhancers	Brain Germinal Matrix	brain
13	chr18:25688000-25691200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:25688000-25691400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:25688000-25691400	Enhancers	Brain Substantia Nigra	brain
16	chr18:25688000-25691600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:25688000-25692800	Enhancers	Brain Hippocampus Middle	brain
18	chr18:25688000-25693200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:25688200-25689400	Enhancers	Brain Angular Gyrus	brain
20	chr18:25688200-25693000	Enhancers	Brain Anterior Caudate	brain
21	chr18:25688200-25694000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr18:25688400-25689800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr18:25688400-25690000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr18:25688400-25690600	Enhancers	Osteobl	bone
25	chr18:25688400-25691400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr18:25688400-25691400	Weak transcription	Fetal Intestine Small	intestine
27	chr18:25688400-25691600	Weak transcription	Fetal Intestine Large	intestine
28	chr18:25688400-25691800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr18:25688400-25692000	Enhancers	HSMM	muscle
30	chr18:25688400-25692200	Enhancers	NH-A	brain
31	chr18:25688400-25693000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr18:25688600-25689600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr18:25688600-25689800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25688600-25689800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr18:25688600-25689800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr18:25688600-25689800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr18:25688600-25690200	Weak transcription	Left Ventricle	heart
38	chr18:25688800-25689400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr18:25688800-25689400	Enhancers	Fetal Brain Male	brain
40	chr18:25688800-25689800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr18:25688800-25690000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr18:25688800-25690000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr18:25689000-25690000	Weak transcription	HSMMtube	muscle
44	chr18:25689000-25690800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr18:25689200-25690000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr18:25689200-25691000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:25689200-25692000	Enhancers	A549	lung
48	chr18:25689200-25692000	Weak transcription	HepG2	liver

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