Variant report

Variant	rs12313657
Chromosome Location	chr12:50112283-50112284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50111189..50113698-chr12:50134402..50137105,2	MCF-7	breast:
2	chr12:50110960..50112506-chr12:50134306..50136045,2	MCF-7	breast:
3	chr12:50110328..50112488-chr12:50136154..50137777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139644	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10128824	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11169110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11169114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11169115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11169120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11169123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12297814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300962	1.00[AMR][1000 genomes]
rs12306951	1.00[AMR][1000 genomes]
rs12310580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312112	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12315508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12317162	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1317263	1.00[AMR][1000 genomes]
rs17119738	1.00[AMR][1000 genomes]
rs17123787	1.00[AMR][1000 genomes]
rs17123827	1.00[AMR][1000 genomes]
rs17123879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17123924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
2	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50102200-50114600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links