Variant report

Variant	rs12314123
Chromosome Location	chr12:119778334-119778335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10774493	1.00[ASN][1000 genomes]
rs10849649	1.00[ASN][1000 genomes]
rs11064769	1.00[ASN][1000 genomes]
rs11064774	1.00[ASN][1000 genomes]
rs12099460	1.00[ASN][1000 genomes]
rs12306000	1.00[ASN][1000 genomes]
rs12306360	1.00[ASN][1000 genomes]
rs12306535	1.00[ASN][1000 genomes]
rs12708370	1.00[ASN][1000 genomes]
rs12830127	1.00[ASN][1000 genomes]
rs2393547	1.00[ASN][1000 genomes]
rs34161061	1.00[ASN][1000 genomes]
rs35135358	1.00[ASN][1000 genomes]
rs35143406	1.00[ASN][1000 genomes]
rs35785729	1.00[ASN][1000 genomes]
rs4238064	1.00[ASN][1000 genomes]
rs4767814	1.00[ASN][1000 genomes]
rs4767816	1.00[ASN][1000 genomes]
rs7296648	1.00[ASN][1000 genomes]
rs7297109	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832528	chr12:119638211-119793401	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899552	chr12:119733874-119814623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119778000-119779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:119778200-119778400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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