Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10774493	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849649	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11064769	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11064774	1.00[ASN][1000 genomes]
rs12099460	1.00[ASN][1000 genomes]
rs12306000	1.00[ASN][1000 genomes]
rs12306360	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12306535	1.00[ASN][1000 genomes]
rs12314123	1.00[ASN][1000 genomes]
rs12708370	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12830127	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2393547	1.00[ASN][1000 genomes]
rs34161061	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35135358	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35143406	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35785729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767814	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767816	1.00[ASN][1000 genomes]
rs68162769	0.81[AFR][1000 genomes]
rs7296648	1.00[ASN][1000 genomes]
rs7297109	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119811400-119816600	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:119811400-119819600	Weak transcription	Lung	lung
3	chr12:119814000-119816200	Weak transcription	Fetal Heart	heart
4	chr12:119814000-119816600	Weak transcription	Right Atrium	heart
5	chr12:119814000-119816600	Weak transcription	Right Ventricle	heart
6	chr12:119814200-119816000	Weak transcription	Left Ventricle	heart
7	chr12:119815400-119817400	Enhancers	Fetal Lung	lung
8	chr12:119815800-119819400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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