Variant report

Variant	rs68162769
Chromosome Location	chr12:119828008-119828009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11064769	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12306360	0.81[AFR][1000 genomes]
rs12830127	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34161061	0.81[AFR][1000 genomes]
rs35135358	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35785729	0.81[AFR][1000 genomes]
rs4238064	0.81[AFR][1000 genomes]
rs4767814	0.81[AFR][1000 genomes]
rs4767816	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119819400-119830800	Weak transcription	Right Atrium	heart
2	chr12:119825200-119829400	Weak transcription	Fetal Heart	heart
3	chr12:119825400-119830000	Weak transcription	Fetal Lung	lung
4	chr12:119826000-119828400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:119827000-119828800	Weak transcription	Left Ventricle	heart
6	chr12:119827000-119829200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr12:119827400-119829000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:119827400-119829600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr12:119827400-119829600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:119827600-119829200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:119827800-119828800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr12:119827800-119829200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:119828000-119829400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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