Variant report

Variant	rs12318416
Chromosome Location	chr12:105874818-105874819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105874327..105876569-chr12:105894873..105897769,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11112544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7297980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899502	chr12:105862964-105904525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105863200-105884200	Weak transcription	Right Atrium	heart
2	chr12:105869000-105875800	Weak transcription	HSMM	muscle
3	chr12:105869000-105878800	Weak transcription	Placenta	Placenta
4	chr12:105869200-105878800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:105871800-105875200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:105872600-105875600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:105873000-105875800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:105873200-105875000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:105873400-105875000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:105873400-105876000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:105874200-105875200	Weak transcription	HSMMtube	muscle
12	chr12:105874400-105875200	Weak transcription	Lung	lung
13	chr12:105874400-105875400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:105874400-105877400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr12:105874400-105877800	Enhancers	HUVEC	blood vessel
16	chr12:105874400-105878800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:105874400-105878800	Weak transcription	NH-A	brain
18	chr12:105874400-105879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:105874400-105879000	Weak transcription	A549	lung
20	chr12:105874400-105893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:105874600-105875400	Weak transcription	Fetal Kidney	kidney
22	chr12:105874600-105877800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:105874600-105879200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr12:105874800-105875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr12:105874800-105878800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links