Variant report

Variant	rs7297980
Chromosome Location	chr12:105872921-105872922
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APPL2-4	chr12:105871938-105873405	ucscGeneNc_uc001tma_2

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11112544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899502	chr12:105862964-105904525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105863200-105884200	Weak transcription	Right Atrium	heart
2	chr12:105868800-105873400	Weak transcription	NH-A	brain
3	chr12:105869000-105874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:105869000-105875800	Weak transcription	HSMM	muscle
5	chr12:105869000-105878800	Weak transcription	Placenta	Placenta
6	chr12:105869200-105873600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:105869200-105878800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:105871200-105874600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:105871800-105875200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:105872000-105873400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:105872200-105873200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:105872200-105873400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:105872200-105873400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:105872400-105873400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:105872400-105873800	Weak transcription	Fetal Brain Male	brain
16	chr12:105872600-105873000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:105872600-105873000	Weak transcription	HUVEC	blood vessel
18	chr12:105872600-105875600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr12:105872800-105873600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr12:105872800-105874400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr12:105872800-105874400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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