Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10506206	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10785280	0.86[ASN][1000 genomes]
rs10785281	0.86[ASN][1000 genomes]
rs10785282	0.84[ASN][1000 genomes]
rs11181108	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12302029	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12302915	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12313459	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12822269	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1495776	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34083464	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34361926	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34637635	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs36074014	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7307151	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7316877	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74078263	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7959299	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7967199	0.81[AMR][1000 genomes]
rs7976931	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7979453	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42094000-42094600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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