Variant report

Variant	rs7967199
Chromosome Location	chr12:42103800-42103801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10506206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11181108	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302029	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302915	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12303689	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12313459	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321130	0.81[AMR][1000 genomes]
rs12812871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12813157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12820488	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12822269	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495776	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34083464	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34361926	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34637635	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35513252	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35770975	0.80[ASN][1000 genomes]
rs36074014	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61411957	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7307151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316877	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74078263	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7959299	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976931	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921440	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42101800-42104000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr12:42101800-42104200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:42101800-42104200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:42101800-42104800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:42102000-42104200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:42102200-42103800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:42102600-42103800	Enhancers	Brain Germinal Matrix	brain
8	chr12:42102600-42104200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:42102600-42104200	Enhancers	Fetal Lung	lung
10	chr12:42102800-42104000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr12:42102800-42104000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:42102800-42104400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:42103000-42103800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:42103000-42104000	Weak transcription	Fetal Kidney	kidney
15	chr12:42103000-42118800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:42103400-42104200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr12:42103600-42103800	Flanking Active TSS	A549	lung
18	chr12:42103600-42104000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr12:42103600-42104000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:42103800-42104000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:42103800-42104000	Active TSS	A549	lung
22	chr12:42103800-42104200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:42103800-42104200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr12:42103800-42104200	Enhancers	Pancreas	Pancrea
25	chr12:42103800-42106400	Weak transcription	Brain Germinal Matrix	brain

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