Variant report

Variant	rs12323533
Chromosome Location	chr14:106144672-106144673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10162574	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2516780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2855786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2855787	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2855789	0.87[AMR][1000 genomes]
rs4983501	1.00[EUR][1000 genomes]
rs7150789	0.88[AMR][1000 genomes]
rs7493939	1.00[EUR][1000 genomes]
rs8016171	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944012	1.00[EUR][1000 genomes]
rs9944013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106141600-106149600	Weak transcription	Spleen	Spleen
2	chr14:106143000-106146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:106144400-106145000	Enhancers	GM12878-XiMat	blood
4	chr14:106144400-106146200	Enhancers	Primary B cells from cord blood	blood
5	chr14:106144600-106145600	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:106144600-106145600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:106144600-106149400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links