Variant report

Variant	rs7493939
Chromosome Location	chr14:106114349-106114350
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10162574	1.00[EUR][1000 genomes]
rs12323533	1.00[EUR][1000 genomes]
rs2516780	1.00[EUR][1000 genomes]
rs2855786	1.00[EUR][1000 genomes]
rs2855787	1.00[EUR][1000 genomes]
rs4983501	1.00[EUR][1000 genomes]
rs8016171	1.00[EUR][1000 genomes]
rs9944012	1.00[EUR][1000 genomes]
rs9944013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106107800-106116800	Weak transcription	Pancreas	Pancrea
2	chr14:106112400-106114800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
3	chr14:106112400-106115000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:106112400-106115200	Enhancers	Liver	Liver
5	chr14:106112600-106114400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:106112600-106114600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:106112600-106114800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr14:106112600-106116000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:106112600-106116800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:106112800-106116000	Enhancers	Primary B cells from cord blood	blood
11	chr14:106113400-106114400	Active TSS	Spleen	Spleen
12	chr14:106114200-106114400	Bivalent Enhancer	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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