Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29522234..29525588-chr18:29534457..29537204,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263823	Chromatin interaction
ENSG00000153339	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11659714	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12607039	0.87[EUR][1000 genomes]
rs12954934	0.87[EUR][1000 genomes]
rs12957054	0.85[ASN][1000 genomes]
rs12965971	0.86[EUR][1000 genomes]
rs2162378	0.82[EUR][1000 genomes]
rs2421178	0.87[EUR][1000 genomes]
rs28639693	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4344833	0.87[EUR][1000 genomes]
rs61736627	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61740662	0.90[ASN][1000 genomes]
rs62093904	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7233756	0.91[AFR][1000 genomes]
rs72929577	0.81[AFR][1000 genomes]
rs7504671	0.82[EUR][1000 genomes]
rs8087124	0.85[ASN][1000 genomes]
rs8092056	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8095428	0.90[ASN][1000 genomes]
rs8097835	0.84[EUR][1000 genomes]
rs8098465	0.87[EUR][1000 genomes]
rs9949272	0.83[EUR][1000 genomes]
rs9950155	0.87[EUR][1000 genomes]
rs9950809	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29531400-29536800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29533600-29535200	Enhancers	Fetal Intestine Small	intestine
4	chr18:29533800-29535000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:29533800-29535200	Enhancers	Liver	Liver
6	chr18:29534400-29535200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:29534400-29535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:29534400-29537400	Weak transcription	Fetal Intestine Large	intestine
9	chr18:29534600-29535000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr18:29534800-29536400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:29534800-29536800	Weak transcription	HepG2	liver
12	chr18:29534800-29537200	Weak transcription	Hela-S3	cervix

Quick Search: