Variant report
| Variant | rs61736627 |
|---|---|
| Chromosome Location | chr18:29542963-29542964 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11659714 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12326193 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12607039 | 0.86[EUR][1000 genomes] |
| rs12954934 | 0.86[EUR][1000 genomes] |
| rs12957054 | 0.91[ASN][1000 genomes] |
| rs12965971 | 0.84[EUR][1000 genomes] |
| rs2162378 | 0.86[EUR][1000 genomes] |
| rs2421178 | 0.86[EUR][1000 genomes] |
| rs28639693 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3859365 | 0.82[ASN][1000 genomes] |
| rs4344833 | 0.86[EUR][1000 genomes] |
| rs61740662 | 0.97[ASN][1000 genomes] |
| rs62093904 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7504671 | 0.86[EUR][1000 genomes] |
| rs8087124 | 0.91[ASN][1000 genomes] |
| rs8092056 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8095428 | 0.97[ASN][1000 genomes] |
| rs8097835 | 0.89[EUR][1000 genomes] |
| rs8098465 | 0.85[EUR][1000 genomes] |
| rs9949272 | 0.87[EUR][1000 genomes] |
| rs9950155 | 0.86[EUR][1000 genomes] |
| rs9950809 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067252 | chr18:29475073-29583744 | Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1065285 | chr18:29527884-29614986 | Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:29539400-29545200 | Weak transcription | Fetal Intestine Small | intestine |
