Variant report

Variant	rs12327651
Chromosome Location	chr19:42288821-42288822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:42283769..42285761-chr19:42286969..42288964,2	MCF-7	breast:
2	chr19:42253200..42254991-chr19:42287539..42289133,2	MCF-7	breast:
3	chr19:42255651..42257648-chr19:42288124..42290756,2	MCF-7	breast:
4	chr19:42286292..42289272-chr19:42318384..42321210,2	K562	blood:
5	chr19:42211076..42212814-chr19:42288522..42291440,2	MCF-7	breast:
6	chr19:42254797..42261680-chr19:42284783..42292674,12	MCF-7	breast:
7	chr19:42274897..42278651-chr19:42287593..42289573,3	MCF-7	breast:
8	chr19:42258231..42260656-chr19:42288307..42290436,3	MCF-7	breast:
9	chr19:42238387..42240007-chr19:42287933..42289826,2	MCF-7	breast:
10	chr19:42250749..42252304-chr19:42286973..42289582,3	MCF-7	breast:
11	chr19:42256878..42257460-chr19:42288323..42288994,2	MCF-7	breast:
12	chr19:42280334..42281890-chr19:42288112..42290516,2	MCF-7	breast:
13	chr19:42250343..42251080-chr19:42288592..42289100,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267881	Chromatin interaction
ENSG00000105388	Chromatin interaction
ENSG00000086548	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3745221	0.98[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv911774	chr19:42250325-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3384883	chr19:42253458-42288853	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3319044	chr19:42257039-42297123	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3319045	chr19:42257039-42297123	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2763205	chr19:42258547-42290598	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv911775	chr19:42259228-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42287200-42289000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr19:42287400-42289000	Enhancers	Primary hematopoietic stem cells	blood
3	chr19:42287400-42289200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr19:42287600-42290000	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:42288000-42289000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr19:42288200-42289400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr19:42288200-42289800	Enhancers	Fetal Intestine Small	intestine
8	chr19:42288200-42292000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr19:42288400-42289000	Enhancers	Duodenum Mucosa	Duodenum
10	chr19:42288400-42289600	Bivalent Enhancer	Primary T cells from cord blood	blood
11	chr19:42288400-42289600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr19:42288400-42289600	Enhancers	Fetal Intestine Large	intestine
13	chr19:42288400-42290000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr19:42288400-42290000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr19:42288400-42290200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:42288600-42289000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr19:42288600-42289000	Flanking Active TSS	Stomach Mucosa	stomach
18	chr19:42288600-42289400	Enhancers	Colonic Mucosa	Colon
19	chr19:42288600-42289800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr19:42288600-42289800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr19:42288600-42290000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr19:42288600-42290000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:42288800-42290000	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr19:42288800-42290000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr19:42288800-42290000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr19:42288800-42290000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
27	chr19:42288800-42290000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:42288800-42290000	Enhancers	GM12878-XiMat	blood
29	chr19:42288800-42290000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr19:42288800-42290400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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