Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10167742	0.93[ASN][1000 genomes]
rs10178610	0.93[ASN][1000 genomes]
rs10188831	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11123079	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12477887	0.89[ASN][1000 genomes]
rs12619039	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12711702	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13400338	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs314889	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs314910	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3924286	0.93[ASN][1000 genomes]
rs4276033	0.96[ASN][1000 genomes]
rs4438483	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4505537	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4602234	0.93[ASN][1000 genomes]
rs4622728	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6717901	0.89[ASN][1000 genomes]
rs6722269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7572346	1.00[ASN][1000 genomes]
rs7602423	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv431646	chr2:125780602-126174341	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874992	chr2:125817682-126046421	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12328802	WDR33	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125843600-125844200	Enhancers	HepG2	liver
2	chr2:125843600-125844600	Enhancers	Fetal Intestine Large	intestine
3	chr2:125843800-125844200	Enhancers	Fetal Intestine Small	intestine
4	chr2:125843800-125844200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr2:125843800-125845000	Flanking Active TSS	Liver	Liver
6	chr2:125844000-125844400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:125844000-125844400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:125844000-125844600	Active TSS	Rectal Mucosa Donor 29	rectum

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