Variant report
| Variant | rs6722269 |
|---|---|
| Chromosome Location | chr2:125834625-125834626 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10167742 | 0.86[ASN][1000 genomes] |
| rs10178610 | 0.86[ASN][1000 genomes] |
| rs10188831 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11123079 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12328802 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12477887 | 0.83[ASN][1000 genomes] |
| rs12619039 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12711702 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13400338 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs314889 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs314910 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3924286 | 1.00[ASN][1000 genomes] |
| rs4276033 | 0.90[ASN][1000 genomes] |
| rs4438483 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4505537 | 0.95[CEU][hapmap];1.00[CHB][hapmap] |
| rs4602234 | 1.00[ASN][1000 genomes] |
| rs4622728 | 1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6717901 | 0.96[ASN][1000 genomes] |
| rs7572346 | 0.93[ASN][1000 genomes] |
| rs7602423 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874991 | chr2:125692490-125901811 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv834362 | chr2:125733921-125907451 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv431646 | chr2:125780602-126174341 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv874992 | chr2:125817682-126046421 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125832400-125839600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
