Variant report

Variant	rs12330431
Chromosome Location	chr3:132954108-132954109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1124217	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13065394	0.82[ASN][1000 genomes]
rs13083001	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17362409	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1901039	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2370048	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4361277	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6439388	0.93[ASN][1000 genomes]
rs6762234	0.93[ASN][1000 genomes]
rs6776118	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803959	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7614582	0.89[ASN][1000 genomes]
rs7614857	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7618220	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628842	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9820056	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838325	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9855734	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9877835	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132948200-132956400	Weak transcription	HSMM	muscle
2	chr3:132950000-132955000	Weak transcription	Fetal Lung	lung
3	chr3:132950800-132956000	Weak transcription	Fetal Brain Female	brain
4	chr3:132951400-132955200	Weak transcription	Fetal Brain Male	brain
5	chr3:132951600-132954400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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