Variant report

Variant	rs13083001
Chromosome Location	chr3:132944132-132944133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1124217	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12330431	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13065394	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13092280	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1450050	0.84[AMR][1000 genomes]
rs16840202	0.81[EUR][1000 genomes]
rs17362409	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1901039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2370048	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28536096	0.82[AMR][1000 genomes]
rs28672850	0.82[AMR][1000 genomes]
rs34221030	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35716595	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4361277	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4574291	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6439388	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6762234	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789490	0.81[AMR][1000 genomes]
rs6803959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7614582	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7614857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7618220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7628842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641938	0.81[EUR][1000 genomes]
rs9289443	0.81[AMR][1000 genomes]
rs9820056	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9825925	0.81[EUR][1000 genomes]
rs9838325	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838338	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9853271	0.82[AMR][1000 genomes]
rs9855734	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9858099	0.81[AMR][1000 genomes]
rs9867089	0.81[EUR][1000 genomes]
rs9876399	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9877835	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132943200-132948000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:132943600-132948800	Weak transcription	Fetal Brain Female	brain

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