Variant report

Variant	rs34221030
Chromosome Location	chr3:132993377-132993378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:45986776..45989363-chr3:132990845..132993529,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1124217	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13065394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083001	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13092280	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1606508	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16840202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17362409	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1901039	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2370048	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35716595	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4361277	0.82[AMR][1000 genomes]
rs6439388	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6762234	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6776118	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6789490	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803959	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7614857	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7618220	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7628842	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7641938	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289443	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9289444	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9820056	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9825925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838325	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838338	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9855734	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9867089	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9876399	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9877835	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132984000-132994800	Weak transcription	HSMMtube	muscle
2	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:132988000-132995200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:132988400-132994200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:132988800-132995600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:132989600-132995600	Weak transcription	Psoas Muscle	Psoas
9	chr3:132990200-133002800	Weak transcription	Lung	lung
10	chr3:132990600-133002800	Weak transcription	Right Atrium	heart
11	chr3:132990800-132994600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:132990800-132995200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:132990800-132995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:132991000-132993600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:132991200-132994800	Weak transcription	Fetal Brain Male	brain
16	chr3:132991600-132996600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:132991800-132995600	Weak transcription	Fetal Lung	lung
18	chr3:132992600-132993800	Weak transcription	Fetal Brain Female	brain
19	chr3:132993200-132993400	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links