Variant report

Variant	rs9289444
Chromosome Location	chr3:133085944-133085945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13065394	0.92[EUR][1000 genomes]
rs13092280	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1606508	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16840202	0.92[EUR][1000 genomes]
rs34221030	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35716595	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6789490	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7641938	0.92[EUR][1000 genomes]
rs9289443	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9825925	0.92[EUR][1000 genomes]
rs9838338	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9867089	0.92[EUR][1000 genomes]
rs9876399	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133072600-133086800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:133081400-133086400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:133081800-133090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:133083200-133099200	Weak transcription	Lung	lung
6	chr3:133084200-133086200	Weak transcription	Fetal Brain Female	brain
7	chr3:133085600-133088200	Enhancers	Fetal Brain Male	brain
8	chr3:133085800-133088000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:133085800-133091600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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