Variant report

Variant	rs9867089
Chromosome Location	chr3:133014479-133014480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1124217	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs13065394	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13077843	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13083001	0.81[EUR][1000 genomes]
rs13092280	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1606508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16840202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362409	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1901039	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs2370048	0.84[EUR][1000 genomes]
rs34221030	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35716595	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4574291	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs4854701	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs4854702	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs6439388	1.00[JPT][hapmap];0.80[MEX][hapmap]
rs6776118	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6789490	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6803959	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7614857	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7618220	0.91[CEU][hapmap];0.87[CHD][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs7628842	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs7641938	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289443	0.95[CEU][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289444	0.92[EUR][1000 genomes]
rs9820056	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs9825925	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828565	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9838325	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9838338	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9855734	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9876399	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9877835	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9968091	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs9968156	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133003400-133015400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:133009800-133015400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:133010400-133016600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:133010800-133015400	Enhancers	HUVEC	blood vessel
5	chr3:133011400-133014600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:133012200-133015000	Enhancers	HSMM	muscle
7	chr3:133012200-133015400	Enhancers	Osteobl	bone
8	chr3:133012400-133014800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:133012400-133015400	Weak transcription	Right Ventricle	heart
10	chr3:133012400-133015600	Enhancers	NH-A	brain
11	chr3:133012600-133014600	Weak transcription	Fetal Stomach	stomach
12	chr3:133012600-133014800	Weak transcription	Fetal Heart	heart
13	chr3:133012600-133015400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:133012800-133015400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:133013000-133015400	Weak transcription	Fetal Brain Female	brain
16	chr3:133013400-133014800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:133013400-133014800	Enhancers	NHEK	skin
18	chr3:133013600-133014800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:133013600-133016400	Enhancers	Fetal Lung	lung
20	chr3:133013800-133014600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:133014000-133014600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr3:133014000-133014600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:133014000-133014600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:133014000-133014600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:133014000-133014600	Enhancers	HMEC	breast
26	chr3:133014000-133014800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:133014000-133015000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:133014000-133015600	Enhancers	Left Ventricle	heart
29	chr3:133014000-133015600	Enhancers	Right Atrium	heart
30	chr3:133014000-133015800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr3:133014000-133016000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:133014000-133016200	Enhancers	HSMMtube	muscle
33	chr3:133014000-133017000	Enhancers	Ovary	ovary
34	chr3:133014200-133014600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr3:133014200-133014600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr3:133014200-133014600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr3:133014200-133014800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:133014200-133014800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:133014200-133014800	Enhancers	GM12878-XiMat	blood
40	chr3:133014200-133015000	Enhancers	Psoas Muscle	Psoas
41	chr3:133014200-133015400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:133014200-133016600	Enhancers	Brain Germinal Matrix	brain
43	chr3:133014200-133016600	Enhancers	Fetal Muscle Leg	muscle
44	chr3:133014400-133014600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr3:133014400-133014800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr3:133014400-133014800	Enhancers	Esophagus	oesophagus
47	chr3:133014400-133015400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:133014400-133015600	Enhancers	Adipose Nuclei	Adipose
49	chr3:133014400-133017000	Enhancers	Fetal Brain Male	brain

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