Variant report

Variant	rs13077843
Chromosome Location	chr3:132966499-132966500
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1124217	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs13065394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13092280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13323117	1.00[JPT][hapmap]
rs1450049	1.00[JPT][hapmap]
rs1450050	1.00[JPT][hapmap]
rs1450054	1.00[JPT][hapmap]
rs1606508	1.00[CEU][hapmap]
rs16840202	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17362409	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1901039	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4574291	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4854701	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4854702	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6439388	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6776118	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6781596	1.00[JPT][hapmap]
rs6789490	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6792070	1.00[JPT][hapmap]
rs6792137	1.00[JPT][hapmap]
rs6794137	1.00[JPT][hapmap]
rs6803959	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6809255	1.00[JPT][hapmap]
rs7614857	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7618220	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7628842	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9289443	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9820056	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9828565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9838325	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9838338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9852954	1.00[JPT][hapmap]
rs9853271	1.00[JPT][hapmap]
rs9855734	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9858099	1.00[JPT][hapmap]
rs9867089	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9876399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9877835	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9968091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9968156	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132958200-132967200	Weak transcription	Fetal Lung	lung
3	chr3:132961200-132967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:132963600-132969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:132964400-132970400	Weak transcription	Right Atrium	heart

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