Variant report

Variant	rs35716595
Chromosome Location	chr3:133016831-133016832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1124217	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13065394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13083001	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13092280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1606508	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16840202	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17362409	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1901039	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2370048	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34221030	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4361277	0.82[AMR][1000 genomes]
rs6439388	0.81[AMR][1000 genomes]
rs6762234	0.85[AMR][1000 genomes]
rs6776118	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6789490	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6803959	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7614857	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7618220	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7628842	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7641938	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9289443	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9289444	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9820056	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9825925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838325	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9838338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855734	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9867089	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9877835	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004358	chr3:133014772-133025177	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2760760	chr3:133014772-133025189	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1006173	chr3:133015093-133025177	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv4016	chr3:133015463-133032477	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv12956	chr3:133016100-133025982	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv514168	chr3:133016526-133023166	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133014000-133017000	Enhancers	Ovary	ovary
2	chr3:133014400-133017000	Enhancers	Fetal Brain Male	brain
3	chr3:133014600-133019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133014800-133019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:133014800-133019800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:133014800-133020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:133015000-133019800	Weak transcription	HSMM	muscle
8	chr3:133015400-133019000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:133015400-133019400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:133015400-133019400	Weak transcription	HUVEC	blood vessel
11	chr3:133015400-133019600	Weak transcription	Osteobl	bone
12	chr3:133015600-133019000	Weak transcription	NH-A	brain
13	chr3:133015600-133019200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:133015600-133020000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:133015800-133019200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:133016200-133020200	Weak transcription	HSMMtube	muscle
17	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
18	chr3:133016600-133017800	Weak transcription	Brain Germinal Matrix	brain
19	chr3:133016600-133018200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:133016600-133018800	Weak transcription	Fetal Brain Female	brain
21	chr3:133016800-133020200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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