Variant report

Variant	rs12331081
Chromosome Location	chr4:19321464-19321465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10002870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10005586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016724	1.00[AMR][1000 genomes]
rs10034525	1.00[AMR][1000 genomes]
rs12331417	1.00[AMR][1000 genomes]
rs12331688	1.00[AMR][1000 genomes]
rs28368707	1.00[AMR][1000 genomes]
rs28478693	1.00[AMR][1000 genomes]
rs28550577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28696799	1.00[AMR][1000 genomes]
rs28772895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9654094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762412	chr4:19317057-19339300	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19320400-19321600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:19320600-19321800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:19321000-19321600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:19321200-19321600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:19321200-19321600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:19321200-19321600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:19321400-19322000	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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