Variant report
| Variant | rs10016724 |
|---|---|
| Chromosome Location | chr4:19456688-19456689 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248515 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10002870 | 1.00[AMR][1000 genomes] |
| rs10005586 | 1.00[AMR][1000 genomes] |
| rs10034525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12331081 | 1.00[AMR][1000 genomes] |
| rs12331417 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12331688 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28403214 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28550577 | 1.00[AMR][1000 genomes] |
| rs28580670 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28693679 | 1.00[AMR][1000 genomes] |
| rs28772895 | 1.00[AMR][1000 genomes] |
| rs9654094 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
