Variant report

Variant	rs28580670
Chromosome Location	chr4:19582399-19582400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10005765	1.00[AMR][1000 genomes]
rs10008379	1.00[AMR][1000 genomes]
rs10011381	1.00[AMR][1000 genomes]
rs10016724	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331417	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331688	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435204	1.00[AMR][1000 genomes]
rs13435258	1.00[AMR][1000 genomes]
rs13435540	1.00[AMR][1000 genomes]
rs28366585	1.00[AMR][1000 genomes]
rs28379617	1.00[AMR][1000 genomes]
rs28403214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403368	1.00[AMR][1000 genomes]
rs28541621	1.00[AMR][1000 genomes]
rs28575200	1.00[AMR][1000 genomes]
rs28632013	1.00[AMR][1000 genomes]
rs28645547	1.00[AMR][1000 genomes]
rs28676742	1.00[AMR][1000 genomes]
rs28693679	1.00[AMR][1000 genomes]
rs56835149	1.00[AMR][1000 genomes]
rs73803159	1.00[AMR][1000 genomes]
rs9654094	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19581400-19582600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19581400-19582600	Weak transcription	Fetal Kidney	kidney
3	chr4:19581600-19582400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:19581600-19582600	Enhancers	Osteobl	bone
5	chr4:19581800-19582400	Enhancers	Colon Smooth Muscle	Colon
6	chr4:19582200-19582400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:19582200-19585600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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