Variant report

Variant	rs28693679
Chromosome Location	chr4:19636323-19636324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10005765	1.00[AMR][1000 genomes]
rs10008379	1.00[AMR][1000 genomes]
rs10010443	1.00[AMR][1000 genomes]
rs10011381	1.00[AMR][1000 genomes]
rs10016724	1.00[AMR][1000 genomes]
rs10034525	1.00[AMR][1000 genomes]
rs12331417	1.00[AMR][1000 genomes]
rs12331688	1.00[AMR][1000 genomes]
rs13435204	1.00[AMR][1000 genomes]
rs13435258	1.00[AMR][1000 genomes]
rs13435540	1.00[AMR][1000 genomes]
rs28366585	1.00[AMR][1000 genomes]
rs28367213	1.00[AMR][1000 genomes]
rs28377148	0.92[AFR][1000 genomes]
rs28379617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403214	1.00[AMR][1000 genomes]
rs28403368	1.00[AMR][1000 genomes]
rs28495397	0.92[AFR][1000 genomes]
rs28541621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548032	0.92[AFR][1000 genomes]
rs28575200	1.00[AMR][1000 genomes]
rs28580670	1.00[AMR][1000 genomes]
rs28632013	1.00[AMR][1000 genomes]
rs28645547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28648664	0.92[AFR][1000 genomes]
rs28676742	1.00[AMR][1000 genomes]
rs28763348	0.92[AFR][1000 genomes]
rs56835149	1.00[AMR][1000 genomes]
rs73803159	1.00[AMR][1000 genomes]
rs9654094	1.00[AMR][1000 genomes]
rs9985643	1.00[AMR][1000 genomes]
rs9990448	1.00[AMR][1000 genomes]
rs9999794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1001485	chr4:19585423-19655316	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013517	chr4:19611067-19655316	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19636200-19636400	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links