Variant report

Variant	rs9999794
Chromosome Location	chr4:19811015-19811016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10005765	1.00[AMR][1000 genomes]
rs10008379	1.00[AMR][1000 genomes]
rs10010443	1.00[AMR][1000 genomes]
rs10011381	1.00[AMR][1000 genomes]
rs13435204	1.00[AMR][1000 genomes]
rs13435258	1.00[AMR][1000 genomes]
rs13435540	1.00[AMR][1000 genomes]
rs28366585	1.00[AMR][1000 genomes]
rs28367213	1.00[AMR][1000 genomes]
rs28379617	1.00[AMR][1000 genomes]
rs28403368	1.00[AMR][1000 genomes]
rs28541621	1.00[AMR][1000 genomes]
rs28575200	1.00[AMR][1000 genomes]
rs28632013	1.00[AMR][1000 genomes]
rs28645547	1.00[AMR][1000 genomes]
rs28676742	1.00[AMR][1000 genomes]
rs28693679	1.00[AMR][1000 genomes]
rs55834545	1.00[EUR][1000 genomes]
rs56835149	1.00[AMR][1000 genomes]
rs62296263	0.83[ASN][1000 genomes]
rs6836955	1.00[EUR][1000 genomes]
rs73801204	1.00[EUR][1000 genomes]
rs73803159	1.00[AMR][1000 genomes]
rs9985643	1.00[AMR][1000 genomes]
rs9990448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1009938	chr4:19787648-19848997	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1001635	chr4:19787648-19854388	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878735	chr4:19810878-19933069	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19809400-19813600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:19809800-19811800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:19810000-19811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:19810400-19811400	Enhancers	Osteobl	bone
5	chr4:19810800-19811400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:19810800-19811400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:19810800-19811400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:19810800-19811600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:19810800-19812000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:19811000-19811200	Enhancers	NH-A	brain
11	chr4:19811000-19811600	Enhancers	Fetal Lung	lung
12	chr4:19811000-19812200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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